Hello Cozy,
Since msi RTX2060super aero itx is the short card, And BP-VG2070RD is the long block. So BP-VG2070RD is not compatible with msi RTX2060super aero itx.
But would you like to give us the PCB photo of msi RTX2060super aero itx?
We will check and see whether any other block fit for it or not.